Cloning and characteristic prediction of 42 kda chitinase from trichoderma asperellum
PDF (Vietnamese)

Keywords

Chitinase 42 kDa
cloning
characteristic Chitinase 42 kDa
đặc tính
tạo dòng
Trichoderma asperellum

How to Cite

1.
Phùng TBH, Mai TTH, Nguyễn HT, Nguyễn T, Nguyễn TKC, Nguyễn XH. Cloning and characteristic prediction of 42 kda chitinase from trichoderma asperellum. hueuni-jns [Internet]. 2021Sep.30 [cited 2024Dec.22];130(1C):105-12. Available from: https://jos.hueuni.edu.vn/index.php/hujos-ns/article/view/6275

Abstract

Chitinase is an enzyme that catalyzes the hydrolytic reaction of chitin by cleaving 1,4-N-acetyl-β-glucosaminide linkages. Chitinase has been widely used in various fields, especially pest control, pollution reduction, and basic and applied biology. Chitinase from microorganisms is an essential source, typically from Trichoderma. After removing intron sequences, the gene encoding chitinase 42 kDa (chi42) from Trichoderma asperellum SH16 was synthesized and cloned into the pUC19 vector. The gene chi42 digested by BamHI and SacI was successfully cloned into the pQE30 vector, which was expressed in E. coli. The primary in silico analysis of the protein structure shows that chitinase is an extracellular protein. The secondary structure analysis reveals that chitinase has 15 α helices and 13 β sheets, while the dimension structure of chitinase is highly homological with the chitin hydrolytic enzyme from T. harzianum. The chitinase from T. asperellum is resistant to temperatures higher than 65 °C and exhibits acidic catalysis activity. Our results would provide basic information for heterologous expression and scale-up production of chitinase 42 kDa.

https://doi.org/10.26459/hueunijns.v130i1C.6275
PDF (Vietnamese)

References

  1. Jollès P, Muzzarelli RA. Chitin and Chitinases. Basel: Birkhäuser; 1999.
  2. Castro SPM, Paulín EGL. The Complex World of Polysaccharides [internet]. Rijeka: InTech; 2012. Chapter 1, Is Chitosan a New Panacea? Areas of Application. p. 1-46. DOI: http://dx.doi.org/10.5772/51200
  3. Catalli A, Kulka M. Recent Patents on Endocrine, Metabolic & Immune Drug Discovery. 2010;4(3):175-189. DOI: https://doi.org/10.2174/1872214811004030175
  4. Hiệp ĐM, Hồng PTA, Thắng NT, Sương NK. Báo cáo Hội nghị khoa học Các biện pháp phòng trừ sâu bệnh không gây ô nhiễm môi sinh, Hồ Chí Minh: Nxb Nông nghiệp; 2007. Khảo sát khả năng đối kháng in vitro của các chủng nấm Trichoderma đối với 3 loại nấm gây bệnh cây trồng (Rhizoctonia solani, Sclerotium rolfsii, Phytophthora palmivora). p. 84-90.
  5. Mitsutomi M, Ohtakara A, Fukamizo T, Goto S. Action pattern of Aeromonas hydrophila chitinase on partially N-acetylated chitosan. Agricultural and Biological Chemistry. 1990;54(4):871-877. DOI: https://doi.org/10.1080/00021369.1990.10870047
  6. Ohtakara A, Matsunaga H, Mitsutomi M. Action pattern of Streptomyces griseus chitinase on partially N-acetylated chitosan. Agricultural and Biological Chemistry. 1990; 54(12):3191-3199. DOI: https://doi.org/10.1271/bbb1961.54.3191
  7. Huy NĐ, Nguyên PQ, Hồng NTT, Giang H, Viên NV, Cảnh NT. Phân lập và đánh giá khả năng đối kháng của Trichoderma asperellum đối với tác nhân gây bệnh có nguồn gốc trong đất. Tạp chí Khoa học Nông nghiệp Việt Nam. 2017;15(12):1593-1604.
  8. Carsolio C, Benhamou N, Haran S, Cortés C, Gutiérrez A, Chet I, et al. Role of the Trichoderma harzianum endochitinase gene ech42 in mycoparistis. Applied and Environmental Microbiology. 1999; 65(3): 929-935. DOI: https://doi.org/10.1128/AEM.65.3.929-935.1999
  9. Harjono, Widyastuti SM. Antifungal activity of purified endochitinase produced by biocontrol agent Trichoderma reesei against Ganoderma philippii. Pakistan Journal Biology Sciences. 2001;4(10):1232-1234. DOI: https://doi.org/10.3923/pjbs.2001.1232.1234
  10. Harman GE, Kubicek CP. Trichoderma And Gliocladium, Volume 2. 1st edition. London: CRC Press; 1998. Chapter 4, Chitinolytic enzymes and their genes; p. 73-92. DOI: https://doi.org/10.1201/9781482267945
  11. Qiagen. pQE-30 (map) [Data file]. 2020. [cited 5 March 2021]. Available from: http://www. helmholtz-muenchen.de/fileadmin/PEPF/ pQE_vectors /pQE- 30_map.pdf
  12. Moon SY. Protocol for lab of plant molecular biotechnology. Chungbuk: Chonbuk National University; 2003.
  13. Sambrook S, Russell DW. Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor; 2003.
  14. Gavel Y, Heijne GV. Sequence differences between glycosylated and non-glycosylated Asn-X-Thr/Ser acceptor sites: implications for protein engineering. Protein Engineering. 1990;3(5):433-442. DOI: https://doi.org/10.1093/protein/3.5.433
  15. Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ. The Phyre2 web portal for protein modeling, prediction and analysis. Nature Protocols. 2015;10(6):845-858. DOI: https://doi.org/10.1038/nprot.2015.053
  16. Giang NM, Huyền ĐT, Hải TN. Sử dụng một số công cụ tin sinh khai thác gen mã hóa enzyme phân hủy Lignocellulose từ dữ liệu Metagenome của vi sinh vật trong ruột mối Coptotermes gestroi. Tạp chí Công nghệ Sinh học. 2016;14(1):39-47.
  17. Fan GL, Li QZ, Zuo YC. Predicting acidic and alkaline enzymes by incorporating the average chemical shift and gene ontology informations into the general form of Chou’s PseAAC. Process Biochemistry. 2013;48:1048–1053. DOI: https://doi.org/10.1016/j.procbio.2013.05.012
  18. Lin H, Chen W, Ding H. AcalPred: A sequence-based tool for discriminating between acidic and alkaline enzymes. PLoS ONE. 2013;8(10):e75726. DOI: https://doi.org/10.1371/journal.pone.0075726
  19. Valderrama-Rincon JD, Fisher AC, Merritt JH, Fan Y, Reading CA, Chhiba K, et al. An engineered eukaryotic protein glycosylation pathway in Escherichia coli. Nature Chemical Biology. 2012;8(5):434-436. DOI: https://doi.org/10.1038/nchembio.921
  20. Lee, YG, Ki Chul Chung, KC, Wi, SG, Lee, JC, Bae, HJ. Purification and properties of a chitinase from Penicillium sp. LYG 0704. Protein Expresion and Purification. 2009;65(2):244-250. DOI: https://doi.org/10.1016/j.pep.2008.12.004
  21. Sherief A, El-Sawah M, Abd El-Naby M. Some properties of chitinase produced by a potent Aspergillus carneus strain. Applied Microbiology and Biotechnology. 1991;35(2). DOI: https://doi.org/10.1007/bf00184691
  22. Binod P, Pusztahelyi T, Nagy V, Sandhya C, Szakács G, Pócsi I, et al. Production and purification of extracellular chitinases from Penicilium aculeatum NRRL 21 under solid-state fermentation. Enzyme and Microbial Technology. 2005;36(7):880-887. DOI: https://doi.org/10.1016/j.enzmictec.2004.12.031
  23. Hà NT. Tối ưu hóa điều kiện nuôi cấy chủng Aspergillus protuberus sinh tổng hợp enzyme chitinase được phân lập từ rừng ngập mặn Cần Giờ. Tạp chí Khoa học, Trường Đại học Cần Thơ. 2012;22b:26-35.
Creative Commons License

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.

Copyright (c) 2021 Array